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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135964928_135965911_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135964928 - 135965911
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
NTQWDQISSVKDETEGLGYH
Intron Amino Acid Position:
2029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
70.3
35.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
34.6
-1.8
3
40.8
39.7
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092