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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135967793_135969706_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135967793 - 135969706
Intron Length:
1914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTTTCAATT
Flanking Amino Acid:
KLSRTANNTQLPERAMFQIK
Intron Amino Acid Position:
2183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
80.7
33.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.5
0.8
0.8
82.8
32.4
Minor 5ss
40.7
-1
3
57.6
46.6
Minor BPS
66.9
0.61
1.4
81.89
33.7

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092