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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135969875_135974631_F

Intron Information:

Intron Rank:
43
Intron Class:
major_hybrid
Intron Phase:
0
Intron Coordinates:
135969875 - 135974631
Intron Length:
4757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTAAAGGTGGAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAAAG
Flanking Amino Acid:
IKKLDADWFQNNPHLKLMYT
Intron Amino Acid Position:
2239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
46.1
-0.2
1.8
46.7
44.6
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
71.6
0.54
1.5
72.05
40.8

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092