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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135975919_135976453_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135975919 - 135976453
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGTTGTTTAAAA
Flanking Amino Acid:
LLREHRVERNRYTVKVQREL
Intron Amino Acid Position:
2348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
73
0.52
0.8
69.1
30.4
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
61
0.34
1.9
73.23
38.5

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092