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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135979340_135979685_F

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135979340 - 135979685
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATT
Flanking Amino Acid:
VDASPWKSQRKGISIPADQP
Intron Amino Acid Position:
2555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.2
0.7
0.9
74.5
38.9
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
71.9
0.76
1.4
84.41
36.8

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092