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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135984427_135985682_F

Intron Information:

Intron Rank:
54
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
135984427 - 135985682
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCGTAC
5'SS Class:
weak_major
3'SS Sequence:
ATTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
GGTTTCAGAACT
Flanking Amino Acid:
YTRSVATSSIVGYILGLGDR
Intron Amino Acid Position:
2774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.2
62.7
38.6
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
87.1
0.83
0.7
86.1
27.7
Minor 5ss
48.7
-0.1
2.9
66.9
44.7
Minor BPS
55.9
0.26
1.8
75.65
40.2

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092