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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135985770_135985846_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135985770 - 135985846
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTTAAAA
Flanking Amino Acid:
QTAELVHIDLGVAFEQGKIL
Intron Amino Acid Position:
2803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.1
44.6
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.7
86.3
26.9
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
72.4
0.7
1.2
78.49
31.1

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092