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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135985962_135987528_F

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135985962 - 135987528
Intron Length:
1567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
AAATATTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TAATCTAAAAAT
Flanking Amino Acid:
GITGVEGVFRRCCEKTMAVM
Intron Amino Acid Position:
2841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
68.6
0.42
1
59.3
45.8
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
47.6
-0.1
2
68.44
41.9

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092