About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_135988395_135988517_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135988395 - 135988517
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTCCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATTC
Flanking Amino Acid:
ADPQECKRKASDDQSFNKVA
Intron Amino Acid Position:
2908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
79.2
28.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.4
0.51
0.9
67.7
32.9
Minor 5ss
29
-2.4
3
39.4
46.1
Minor BPS
59.4
0.27
1.6
65.28
41.5

Associated Gene:

Gene:
ATM
Ensembl Gene ID:
ENSAPLG00000012735
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013383
135924607 - 135988698
64092