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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136014612_136015635_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136014612 - 136015635
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTCAATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTCCTCTCAATT
Flanking Amino Acid:
DLLEKIKWAKENDEEAQKIA
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.8
0.63
0.9
68.6
41.7
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
55.3
0.25
1.6
68.82
42.7

Associated Gene:

Gene:
POGLUT3
Ensembl Gene ID:
ENSAPLG00000012507
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013038
136012902 - 136020419
7518