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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136015831_136016650_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136015831 - 136016650
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAAGC
5'SS Class:
major
3'SS Sequence:
TCTTCATTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTATCTTCATTT
Flanking Amino Acid:
PLMGFFDFFKYKYQVNVDGT
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
60.8
44.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.2
0.73
0.7
77.6
29.9
Minor 5ss
38
-1.4
3.2
52.3
44.5
Minor BPS
57
0.3
1.8
76.89
40.1

Associated Gene:

Gene:
POGLUT3
Ensembl Gene ID:
ENSAPLG00000012507
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013038
136012902 - 136020419
7518