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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136016848_136018244_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136016848 - 136018244
Intron Length:
1397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTAATGCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATCTTAATG
Flanking Amino Acid:
NDLLSIQGNTGPFWENKTEQ
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.9
0.4
0.9
61.7
39.7
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
74.5
0.63
1.3
75.63
36.4

Associated Gene:

Gene:
POGLUT3
Ensembl Gene ID:
ENSAPLG00000012507
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013038
136012902 - 136020419
7518