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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136019188_136020221_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136019188 - 136020221
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AAATACTGACTC
Flanking Amino Acid:
HVAQSPYILKGPVYHEYCDC
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.3
0.8
0.8
80.8
30.9
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
45.4
-0.3
1.8
53.16
37.8

Associated Gene:

Gene:
POGLUT3
Ensembl Gene ID:
ENSAPLG00000012507
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013038
136012902 - 136020419
7518