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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136041369_136043215_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136041369 - 136043215
Intron Length:
1847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTATCTTTATTT
Flanking Amino Acid:
NEQLEKEFFSVLSDLDDQLA
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.3
0.7
0.9
76.8
31.7
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
64.5
0.53
1.6
77.38
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033277
136036018 - 136068822
32805
ENSAPLT00000022856
136036018 - 136052035
16018
ENSAPLT00000018013
136036018 - 136063051
27034