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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136044757_136049234_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136044757 - 136049234
Intron Length:
4478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCTCCTCACAG
Flanking Amino Acid:
SRKNQTQKQPRYDSSASTAP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.4
29.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81.7
0.71
0.7
75.9
26.2
Minor 5ss
42.3
-0.8
2.9
59
45.5
Minor BPS
49.4
-0.1
2
60.81
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018013
136036018 - 136063051
27034
ENSAPLT00000033277
136036018 - 136068822
32805
ENSAPLT00000022856
136036018 - 136052035
16018