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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136049380_136051877_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136049380 - 136051877
Intron Length:
2498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
ATAATATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAATA
Flanking Amino Acid:
EHQLRNSKKTNHKEFKMSSH
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
67.3
39.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.8
0.47
1
67.5
43
Minor 5ss
42.7
-0.8
2.8
58.3
40.4
Minor BPS
67.5
0.55
1.5
79.43
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033277
136036018 - 136068822
32805
ENSAPLT00000018013
136036018 - 136063051
27034