Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136078053_136081336_F

Intron Information:

Intron Rank:

138922

Intron Class:

major

Intron Phase:

Intron Coordinates:

136078053 - 136081336

Intron Length:

3284

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCAAT

5'SS Class:

strong_major

3'SS Sequence:

CTCCTTCTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

GCATTGTTACAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

77.9

38.6

Major BPS

71.4

0.53

1.2

63.4

Major PPT

81.5

0.71

0.7

79.8

25.6

Minor 5ss

39.7

-1.2

3.2

56.4

Minor BPS

40.1

-0.8

2.2

41.3

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024793

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035559

136077479 - 136082530

5052