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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136103202_136103413_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
136103202 - 136103413
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CCCCAAATGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
CTTCCCACACCC
Flanking Amino Acid:
DFPLSKKTLKGLQEAQYRMV
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
51.6
0.04
1
43.3
36.1
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
45.6
-0.3
2.1
61.35
43.7

Associated Gene:

Gene:
DDX10
Ensembl Gene ID:
ENSAPLG00000011942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012497
136096003 - 136275823
179821