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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136105229_136105687_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136105229 - 136105687
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TAACTTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCTGCTTTAACT
Flanking Amino Acid:
FSAGLIIGGKDLKEESERIH
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
77.5
0.62
0.9
74.4
39.5
Minor 5ss
43.5
-0.7
2.7
59
45.7
Minor BPS
77.8
0.95
1.3
87.23
39

Associated Gene:

Gene:
DDX10
Ensembl Gene ID:
ENSAPLG00000011942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012497
136096003 - 136275823
179821