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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136105809_136106943_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136105809 - 136106943
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTCTCAATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCAATT
Flanking Amino Acid:
YFYASDLQMLILDEADRILD
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.7
0.69
0.9
78.9
33.3
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
70.4
0.72
1.5
83.48
38.1

Associated Gene:

Gene:
DDX10
Ensembl Gene ID:
ENSAPLG00000011942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012497
136096003 - 136275823
179821