About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136107134_136109312_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
136107134 - 136109312

Intron Length:
2179

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATGTTGG

5'SS Class:
strong_major

3'SS Sequence:
TTTATATGTTAAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTGTACCTAATT

Flanking Amino Acid:
YVWVHEKAKFSTPATLDQSY

Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
85.9
0.85
0.9
71.4
41.2

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
68.2
0.41
1.2
72.5
41.7

Minor 5ss
45.7
-0.5
2.5
58.3
46.4

Minor BPS
61.6
0.44
1.9
81.81
39.7

Associated Gene:

Gene:
DDX10

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

136096003 - 136275823
179821