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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136112056_136124672_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136112056 - 136124672
Intron Length:
12617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCATATT
5'SS Class:
major
3'SS Sequence:
TCTTTTGGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCTTTTGGATC
Flanking Amino Acid:
TYIHRVGRTARYKEGGEALL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
76.5
38.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
73
0.52
1
73.7
40.6
Minor 5ss
36.3
-1.6
3.1
52
44.5
Minor BPS
54.3
0.12
1.4
64.89
35.4

Associated Gene:

Gene:
DDX10
Ensembl Gene ID:
ENSAPLG00000011942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012497
136096003 - 136275823
179821