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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13613485_13614668_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13613485 - 13614668
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTT
Flanking Amino Acid:
IESTGDLVYRVVTSGNPVLD
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
60.2
0.4
1.5
74.31
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256