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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1361433_1362072_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1361433 - 1362072
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTTGGGTTGATG
Flanking Amino Acid:
GRREIEIAEQEMPALMALRK
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
88.2
0.86
0.7
85.4
29.3
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
44.1
-0.6
2.5
57.57
45

Associated Gene:

Gene:
AHCYL2
Ensembl Gene ID:
ENSAPLG00000015897
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016614
1350099 - 1362879
12781