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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136145679_136198263_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136145679 - 136198263
Intron Length:
52585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
GMEAKDGPAQNASNSKMKKK
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.6
0.85
0.8
84
30
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
DDX10
Ensembl Gene ID:
ENSAPLG00000011942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012497
136096003 - 136275823
179821