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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13614838_13617106_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13614838 - 13617106
Intron Length:
2269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATGG
5'SS Class:
major
3'SS Sequence:
TATATCTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AACCAATTAACA
Flanking Amino Acid:
PVFRGNMAIQTVTIYILEGT
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.2
40.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.3
0.57
1
69.7
41
Minor 5ss
39.1
-1.2
3.1
47.7
42.2
Minor BPS
49.2
-0
1.8
59.31
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256