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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13618482_13618585_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13618482 - 13618585
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATTTAACA
Flanking Amino Acid:
KVFDYEKDPHWYFLNITVTD
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.8
0.69
0.9
76.9
35.7
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
73.9
0.75
1.4
80.03
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256