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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136198378_136200590_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136198378 - 136200590
Intron Length:
2213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ACCTATAATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTCTTACCT
Flanking Amino Acid:
TRIVFTEEGELVQQWPPVQK
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
65.2
0.34
1
55.5
43
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
79.4
1
1.5
95.32
31.5

Associated Gene:

Gene:
DDX10
Ensembl Gene ID:
ENSAPLG00000011942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012497
136096003 - 136275823
179821