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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13622339_13623628_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13622339 - 13623628
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGACAA
5'SS Class:
major
3'SS Sequence:
GCTTTCTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GAGTATCTAACT
Flanking Amino Acid:
SSVPYFSINPSTGLLQVTRR
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
69.9
36.1
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
72.5
0.51
1
65
41.2
Minor 5ss
33.7
-1.9
3.2
43.9
43.6
Minor BPS
49.7
0.06
1.9
67.9
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256