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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13623819_13625569_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13623819 - 13625569
Intron Length:
1751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGAGG
5'SS Class:
major
3'SS Sequence:
TTCTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
NPPECFPSTFRKEINENTTA
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
57
47.3
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
79.5
0.66
0.9
77.4
34.7
Minor 5ss
43.3
-0.7
3
57.4
46.9
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256