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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136264058_136275630_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136264058 - 136275630
Intron Length:
11573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
CAGTTGTTAAAA
Flanking Amino Acid:
EQDSESEDSHSELEEKRGRK
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
47.6
-0.1
2.1
56.89
42.5

Associated Gene:

Gene:
DDX10
Ensembl Gene ID:
ENSAPLG00000011942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012497
136096003 - 136275823
179821