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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13627377_13627520_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13627377 - 13627520
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTATATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCATACTTAACT
Flanking Amino Acid:
VRDIASPHYSNIIYIYIRIK
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
92.2
19.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.6
0.67
0.9
70.2
44.7
Minor 5ss
31.7
-2.1
3.9
46.1
36.1
Minor BPS
69
0.68
1.6
77.77
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256