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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13627620_13630461_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13627620 - 13630461
Intron Length:
2842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTCTTCCTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TGTTAGTGAAAT
Flanking Amino Acid:
YEFNVRETTKVGSRIGEVHA
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
81.8
0.72
0.7
81.3
23.8
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
46.6
-0.1
2.3
72.48
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256