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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13633209_13635907_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13633209 - 13635907
Intron Length:
2699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CTTGTTTTAAAA
Flanking Amino Acid:
PNPTTAITTTPGFTLVTRKE
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
68.9
0.43
1.1
71.4
37.5
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
59.4
0.29
1.5
67.32
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256