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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136345846_136346990_F

Intron Information:

Intron Rank:
126632
Intron Class:
major
Intron Phase:
Intron Coordinates:
136345846 - 136346990
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATCATT
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ATGTTTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
75
41
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
45.9
-0.4
2.9
67.7
43
Minor BPS
55.2
0.16
2
68.54
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018257
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021382
136345746 - 136349253
3508