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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136349554_136350855_R

Intron Information:

Intron Rank:
136557
Intron Class:
major
Intron Phase:
Intron Coordinates:
136349554 - 136350855
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGCATTT
5'SS Class:
major
3'SS Sequence:
CTTCATCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTCTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
72.5
39.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.7
0.67
0.8
77.4
30.9
Minor 5ss
48
-0.2
3.2
73.4
43.4
Minor BPS
61
0.42
1.8
81.04
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042787
136349468 - 136354260
4793