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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13636090_13637434_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13636090 - 13637434
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTTTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
PPAHKADGAPLINAPGKKKP
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
64.8
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
90.4
0.91
0.7
85.2
28
Minor 5ss
34.3
-1.8
3.1
52.6
43.7
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256