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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13637449_13639140_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13637449 - 13639140
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GATTCTTTACAA
Flanking Amino Acid:
ADGAPLINAPGKKKPKKEVV
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.1
34.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
88.1
0.86
0.6
84.9
22.8
Minor 5ss
30.5
-2.2
2.8
37.5
39.9
Minor BPS
57
0.22
1.7
66.59
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256