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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136381474_136386567_R

Intron Information:

Intron Rank:
130452
Intron Class:
major
Intron Phase:
Intron Coordinates:
136381474 - 136386567
Intron Length:
5094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTGTGCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CAGTAATTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.9
0.67
0.9
73.8
36.9
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
42
-0.7
2
42.47
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017435
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031085
136380496 - 136386601
6106