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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13639173_13639717_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13639173 - 13639717
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TCTCCCTTCACA
Flanking Amino Acid:
KKKPKKEVVLKMTRLNTVFD
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81
0.7
0.7
75.4
26.7
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
67.9
0.56
1.8
76.69
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005922
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006132
13610263 - 13642518
32256