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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136493179_136495620_F

Intron Information:

Intron Rank:
125149
Intron Class:
major
Intron Phase:
Intron Coordinates:
136493179 - 136495620
Intron Length:
2442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTGG
5'SS Class:
major
3'SS Sequence:
CCTTGTGTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTTCTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61.3
45.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
66.8
0.38
1.1
66.6
38.5
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
62.8
0.48
1.6
80.61
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017399
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032185
136493122 - 136508768
15647