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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136493179_136507412_F

Intron Information:

Intron Rank:
125148
Intron Class:
major
Intron Phase:
Intron Coordinates:
136493179 - 136507412
Intron Length:
14234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTGG
5'SS Class:
major
3'SS Sequence:
TGAGACATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCTCTAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61.3
45.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
60.3
0.23
1
52.2
42.1
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
57.7
0.32
2
80.33
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017399
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022040
136493122 - 136507500
14379