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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136639856_136658235_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136639856 - 136658235
Intron Length:
18380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAAGAT
U12 Branch Point Sequence:
AGATGTGTAACC
Flanking Amino Acid:
MLTLLLQEYGTLYIQEY
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
49.8
-0
1.3
49.1
44.8
Major PPT
84.2
0.77
0.8
81.4
30.7
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
45.7
-0.3
2.3
58.01
40.9

Associated Gene:

Gene:
ZC3H12C
Ensembl Gene ID:
ENSAPLG00000002854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024905
136639602 - 136678556
38955