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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136640671_136643605_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
136640671 - 136643605
Intron Length:
2935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CTAGTTATAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.2
87.9
29.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
68.3
0.41
1
65
36.4
Minor 5ss
41.5
-0.9
2.9
58.8
45.7
Minor BPS
50.8
0.1
1.7
68.66
42.6

Associated Gene:

Gene:
ZC3H12C
Ensembl Gene ID:
ENSAPLG00000002854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020193
136640172 - 136679502
39331