Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136697749_136699411_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

136697749 - 136699411

Intron Length:

1663

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGAGCT

5'SS Class:

major

3'SS Sequence:

GACTGATGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

ATCTCATTAACC

Flanking Amino Acid:

TKQRIDEFEAMWCTRASRCC

Intron Amino Acid Position:

583

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

70.7

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

0.27

1.1

54.3

44.6

Minor 5ss

30.1

-2.3

3.5

44.3

43.3

Minor BPS

72.2

0.68

1.6

78.19

37.1

Associated Gene:

Gene:

RDX

Ensembl Gene ID:

ENSAPLG00000002864

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040628

136697159 - 136731535

34377