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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136699573_136700547_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136699573 - 136700547
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
TTTTATTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCAACA
Flanking Amino Acid:
KNERVKKQLQALSSELAQAR
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.6
0.71
0.9
78
34.9
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
66.7
0.52
1.7
80.77
34.6

Associated Gene:

Gene:
RDX
Ensembl Gene ID:
ENSAPLG00000002864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020220
136684060 - 136731535
47476
ENSAPLT00000002962
136692642 - 136731475
38834
ENSAPLT00000048428
136687631 - 136731535
43905
ENSAPLT00000042612
136698692 - 136731535
32844
ENSAPLT00000040628
136697159 - 136731535
34377