Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136711791_136712278_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

136711791 - 136712278

Intron Length:

488

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTTCATCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

CTGTGTTTACAT

Flanking Amino Acid:

NWHEEHRGMLREDSMMEYLK

Intron Amino Acid Position:

184

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

80.7

31.6

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

81.1

0.7

0.8

81.4

Minor 5ss

35.4

-1.7

3.2

50.9

45.5

Minor BPS

46.3

-0.2

2.1

64.08

46.7

Associated Gene:

Gene:

RDX

Ensembl Gene ID:

ENSAPLG00000002864

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042612

136698692 - 136731535

32844

ENSAPLT00000040628

136697159 - 136731535

34377

ENSAPLT00000020220

136684060 - 136731535

47476

ENSAPLT00000002962

136692642 - 136731475

38834

ENSAPLT00000048428

136687631 - 136731535

43905