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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136712363_136714828_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136712363 - 136714828
Intron Length:
2466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGACAG
5'SS Class:
major
3'SS Sequence:
TTTCTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTAATTTAATA
Flanking Amino Acid:
YLANDRLLPQRVLEQHKLTK
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
59
41.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.2
0.79
0.7
80.3
30.6
Minor 5ss
26.3
-2.7
2.9
31.2
42.3
Minor BPS
61.5
0.36
1.5
69.9
36.2

Associated Gene:

Gene:
RDX
Ensembl Gene ID:
ENSAPLG00000002864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002962
136692642 - 136731475
38834
ENSAPLT00000048428
136687631 - 136731535
43905
ENSAPLT00000042612
136698692 - 136731535
32844
ENSAPLT00000040628
136697159 - 136731535
34377
ENSAPLT00000020220
136684060 - 136731535
47476