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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136715104_136716755_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136715104 - 136716755
Intron Length:
1652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTTACT
Flanking Amino Acid:
YSTWLKLNKKVTQQDVRKEN
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.9
0.65
0.7
78
23.9
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
65.9
0.58
1.9
89.07
35.1

Associated Gene:

Gene:
RDX
Ensembl Gene ID:
ENSAPLG00000002864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042612
136698692 - 136731535
32844
ENSAPLT00000040628
136697159 - 136731535
34377
ENSAPLT00000020220
136684060 - 136731535
47476
ENSAPLT00000002962
136692642 - 136731475
38834
ENSAPLT00000048428
136687631 - 136731535
43905