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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136716852_136721465_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136716852 - 136721465
Intron Length:
4614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTAC
5'SS Class:
strong_major
3'SS Sequence:
CGCTTATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GGTCGCTTATCT
Flanking Amino Acid:
NTTGKQLFDQVVKTVGLREV
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1.1
78.4
32.4
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
72.8
0.51
0.8
70.1
35.5
Minor 5ss
46
-0.4
2.6
61.1
43.8
Minor BPS
50.4
0.09
2.1
71.3
44.9

Associated Gene:

Gene:
RDX
Ensembl Gene ID:
ENSAPLG00000002864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042612
136698692 - 136731535
32844
ENSAPLT00000040628
136697159 - 136731535
34377
ENSAPLT00000020220
136684060 - 136731535
47476
ENSAPLT00000002962
136692642 - 136731475
38834
ENSAPLT00000048428
136687631 - 136731535
43905